combine@alvar.ug

In Silico Analysis of Ixodid Tick Aqauporin-1 Protein as a Candidate Anti-Tick Vaccine Antigen

In Silico Analysis of Ixodid Tick Aqauporin-1 Protein as a Candidate Anti-Tick Vaccine Antigen

Show simple record

dc.contributor.author Christian Ndekezi
dc.contributor.author Joseph Nkamwesiga
dc.contributor.author Sylvester Ochwo
dc.contributor.author Magambo Phillip Kimuda
dc.contributor.author Frank Norbert Mwiine
dc.contributor.author Robert Tweyongyere
dc.contributor.author Wilson Amanyire
dc.contributor.author Dennis Muhanguzi
dc.date.accessioned 2021-01-11T13:52:00Z
dc.date.available 2021-01-11T13:52:00Z
dc.date.issued 2019
dc.identifier.uri https://combine.alvar.ug/handle/1/49788
dc.description.abstract Abstract Ticks are arthropod vectors of pathogens of both Veterinary and Public health importance. Ticks are largely controlled by acaricide application. However, acaricide efficacy is hampered by high cost, the need for regular application and selection of multi-acaricide resistant tick populations. In light of this, future tick control approaches are poised to rely on integration of rational acaricide application and other methods such as vaccination. To contribute to systematic research-guided efforts to produce anti-tick vaccines, we carried out an in silico tick Aquaporin-1 protein (AQP1) analysis to identify unique tick AQP1 peptide motifs that can be used in future peptide anti-tick vaccine development. We used multiple sequence alignment (MSA), motif analysis, homology modeling, and structural analysis to identify unique tick AQP1 peptide motifs. BepiPred, Chou & Fasman-Turn, Karplus & Schulz Flexibility and Parker-Hydrophilicity prediction models were used to asses these motifs’ abilities to induce antibody mediated immune responses. Tick AQP1 (MK334178) protein homology was largely similar to the bovine AQP1 (PDB:1J4N) (23% sequence similarity; Structural superimposition RMS=1.475). The highest similarities were observed in the transmembrane domains while differences were observed in the extra and intra cellular protein loops. Two unique tick AQP1 (MK334178) motifs, M7 (residues 106-125, p=5.4e-25) and M8 (residues 85-104, p=3.3e-24) were identified. These two motifs are located on the extra-cellular AQP1 domain and showed the highest Parker-Hydrophilicity prediction immunogenic scores of 1.153 and 2.612 respectively. The M7 and M8 motifs are a good starting point for the development of potential peptide-based anti-tick vaccine. Further analyses such as in vivo immunization assays are required to validate these findings.
dc.publisher Cold Spring Harbor Laboratory
dc.title In Silico Analysis of Ixodid Tick Aqauporin-1 Protein as a Candidate Anti-Tick Vaccine Antigen
dc.type Preprint
dc.identifier.doi 10.1101/636985
dc.identifier.mag 2945955404
dc.identifier.lens 137-640-851-944-688
dc.identifier.spage 636985
dc.subject.lens-fields Transmembrane domain
dc.subject.lens-fields Homology modeling
dc.subject.lens-fields In silico
dc.subject.lens-fields Tick
dc.subject.lens-fields Tick Control
dc.subject.lens-fields Protein Data Bank (RCSB PDB)
dc.subject.lens-fields Computational biology
dc.subject.lens-fields Acaricide
dc.subject.lens-fields Biology
dc.subject.lens-fields Multiple sequence alignment


This record appears in the collections of the following institution(s)

Show simple record

Search Entire Database


Browse

My Account